You are overthinking this and making mistakes due to your assumptions. When you water with a small set amount like that, without saturating the medium to the point of runoff, here is what happens. Gravity.
When you water with that small amount of water, it immediately falls down to the bottom of the container. The top spreader roots get a momentary drink, but then the water moves past them, the top dries out and the only place wet in that container is the very bottom... the place you were trying to avoid this problem!
It is best to fully saturate the soil, from top to bottom, treating the soil as if it were a sponge, and you are trying to fill it up with the very most water it can hold before it flows out of the bottom as runoff. When you do this, every region is the container is wet and ALL the roots from top to bottom are getting benefit. This is way more healthy for the overall plant than what you are doing, only sending water to the very bottom roots. Always water with gusto, watering to runoff... and then patiently wait for the plant to use ALL of that water, all the way down to the bottom. That is how you avoid root rot, by allowing the bottom to dry out BETWEEN waterings.